musket安装与试用

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安装环境

Ubuntu18.10
musket-1.1

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安装过程

安装和使用参考官网 http://musket.sourceforge.net/homepage.htm
在这里下载源码包
然后进入解压后的路径 控制台输入make
编译所有文件后，将文件夹路径输入
export PATH=$PATH:/opt/musket-1.1
source ~/.bashrc
然后在控制台输入musket就可以使用了

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介绍

Musket is a well-established leading next-generation sequencing read error correction algorithm targetting Illumina sequencing. This corrector employs the k-mer spectrum approach and introduces three correction techniques in a multistage workflow. Our performance evaluation results, in terms of correction quality and de novo genome assembly measures, reveal that Musket is consistently one of the top performing substitution-error-based correctors. In addition, Musket is multi-threaded using a master-slave model and demonstrates superior parallel scalability compared to all other evaluated correctors as well as a highly competitive overall execution time.