安装ggcor包
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链接:https://pan.baidu.com/s/10zk5El3kooeHuPsz2qul-A
提取码:3zly
Example
library(vegan)
library(ggcor)
library(tidyverse)
data(varechem)
data(varespec)
mantel <- mantel_test(varespec, varechem,
spec.select = list(Spec01 = 1:7,
Spec02 = 8:18,
Spec03 = 19:37,
Spec04 = 38:44)) %>%
mutate(rd = cut(r, breaks = c(-Inf, 0.2, 0.4, Inf),
labels = c("< 0.2", "0.2 - 0.4", ">= 0.4")),
pd = cut(p.value, breaks = c(-Inf, 0.01, 0.05, Inf),
labels = c("< 0.01", "0.01 - 0.05", ">= 0.05")))
quickcor(varechem, type = "upper") +
geom_square() +
anno_link(aes(colour = pd, size = rd), data = mantel) +
scale_size_manual(values = c(0.5, 1, 2))+
guides(size = guide_legend(title = "Mantel's r",
order = 2),
colour = guide_legend(title = "Mantel's p",
order = 1),
fill = guide_colorbar(title = "Pearson's r", order = 3))
参考
- ggcor绘制相关性热图
参考文章如引起任何侵权问题,可以与我联系,谢谢。