DNA甲基化

差异的甲基化

差异的甲基化位点位于基因的prometer区域,我们才去保留,主要包括(TSS200和TSS1500)

注释文件来自ChAMP工具包,data一下即可

一般的差异定义标准为


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参考文献:Immune Signature-Based Subtypes of Cervical Squamous Cell Carcinoma Tightly Associated with
Human Papillomavirus Type 16 Expression, Molecular Features, and Clinical Outcome

差异标准提高:

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参考文献:Epigenetic age acceleration of cervical squamous cell carcinoma converged to human papillomavirus 16/18 expression, immunoactivation, and favourable prognosis

promoter regions 默认(TSS200和TSS1500)

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参考文献:The signature of HBV-related liver disease in peripheral blood mononuclear cell DNA methylation

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