fastp的安装与试用

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[TOC]

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安装环境

Ubuntu18.10
fastp 在2018.12.3的版本

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安装过程

在此网站https://github.com/OpenGene/fastp#simple-usage或在http://opengene.org/下载名为fastp的文件就可以直接运行

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试用

simple usage
for single end data (not compressed)
fastp -i in.fq -o out.fq
for paired end data (gzip compressed)
fastp -i in.R1.fq.gz -I in.R2.fq.gz -o out.R1.fq.gz -O out.R2.fq.gz
By default, the HTML report is saved to fastp.html (can be specified with -h option), and the JSON report is saved to fastp.json (can be specified with -j option).