NCBI总结ftp

ftp地址:

ftp.ncbi.nih.gov:/genomes 201223

大概按目录的字母顺序翻译了一下。除去了真菌细菌和病毒(实在太多了!) 个人觉得数据还不是很全。例如Bombyx mori家蚕的数据就没有。

(某些拉丁名不完全规范)

总目录

Acyrthosiphon pisum 蚜虫

Aedes egypti埃及伊蚊

Ailuropoda melanoleuca 大熊猫

Amphimedon queenslandica大堡礁海绵

Anolis carolinensis北美绿蜥蜴

Anopheles gambiae冈比亚按蚊

Apis mellifera 蜜蜂

Arabidopsis lyrata琴叶拟南芥

Arabidopsis thaliana 拟南芥

Bombus impatiens 某种熊蜂

Bombus terrestris 某种熊蜂

Bos Taurus

Brachypodium distachyon二穗短柄草

Branchiostoma floridae 文昌鱼

Brugia malayi马来丝虫

Caenorhabditis elegans秀丽隐杆线虫

Callithrix jacchus狨猴

Canis familiaris /Canis_lupus_familiaris 家犬

Cavia porcellus土拨鼠/豚鼠也叫做荷兰猪

Ciona intestinalis玻璃海鞘

Cricetulus griseus中国仓鼠

Danio rerio 斑马鱼

Drosophila melanogaster 果蝇

Drosophila pseudoobscura拟暗果蝇

Equus caballus普氏野马

Gallus gallus

Glycine max 大豆

Homo sapiens 智人

Hydra magnipapillata大乳头水螅

Loxodonta Africana非洲象

Mus musculus 小鼠

Macaca mulatta猕猴

Medicago truncatula蒺藜苜蓿

Meleagris gallopavo 火鸡

Monodelphis domestica短尾猊

Nasonia vitripennis丽蝇蛹集金小蜂

Nomascus leucogenys白颊长臂猿

Oreochromis niloticus罗非鱼

Ornithorhynchus anatinus鸭嘴兽

Oryctolagus cuniculus穴兔。入侵物种之一

Oryza sativa 水稻

Pan troglodytes穴居人,黑猩猩

Physcomitrella patens小立碗藓

Plasmodium_falciparum 恶心疟原虫

Pongo abelii苏门达腊猩猩

Populus trichocarpa 杨树

Rattus norvegicus 大鼠

Saccoglossus kowalevskii囊舌虫。好恶心的虫子

Sorghum bicolor 高粱

Strongylocentrotus purpuratus紫色球海胆

Sus scrofa 野猪

Taeniopygia guttata 珍珠鸟。这么漂亮的鸟儿也测序了呢~

Tribolium castaneum谷蛀虫

Vitis vinifera 葡萄

Xenopus Silurana tropicalis非洲蟾蜍

 

“Protozoa”目录 原生动物

Cryptosporidium parvum微小隐孢子虫

Dictyostelium discoideum阿米巴虫

Leishmania braziliensis巴西利什曼原虫

Leishmania infantum利什曼原虫

Leishmania major利什曼原虫

Plasmodium falciparum 恶性疟原虫

Theileria annulata牛环形泰勒虫

Theileria parva泰勒虫

Trypanosomabrucei锥虫

 

“PLANT”目录。貌似不是完整的基因组序列。注释如下:

This directory contains the files of material used in, or associated with the maps provided in MapViewer. This directory contains organism directories that hold files of various types of sequence files for the organism. These are:

i) <organism_name>.BES.gz, the clone-end sequences in FASTA format from bacterial artifical chromosome libraries

ii) <organism_name>.SES.gz, the clone-end sequences in FASTA format from genomic shotgun libraries

iii) <organism_name>.DArT.gz, the DArT sequences in FASTA format.

Amaranthus hypochondriacus

Aquilegia Formosa耧斗菜

Arabidopsis halleri鼠耳芥

Arabidopsis thaliana 拟南芥

Arachis duranensis蔓花生

Arachis hypogaea 花生

Asparagus officinalis 芦笋

Asplenium蕨类

Avena sativa燕麦

Beta vulgaris 甜萝卜

Brachypodium distachyon 二穗短柄草

Brassica napus 油菜

Brassica oleracea 甘蓝

Brassica rapa 芜菁

Cajanus cajan 木豆

Carica papaya番木瓜

Chlamydomonas reinhardtii莱茵衣藻

Cicer arietinum鹰嘴豆

Citrus clementina金钱橘

Coffea arabica 咖啡树

Cucumis melo 香瓜

Cucumis sativus 黄瓜

Garovaglia 苔类

Glycine max 大豆

Glycine soja 野生大豆

Glycine tomentella短绒野大豆

Gossypium arboreum 亚洲棉

Gossypium barbadense 海岛棉

Gossypium exiguum 某种棉

Gossypium herbaceum

Gossypium hirsutum 陆地棉

Gossypium raimondii雷蒙德氏棉

Hevea brasiliensis橡胶树

Hordeum vulgare 大麦

Liriodendron tulipifera北美鹅掌楸

Lolium perenne 黑麦草

Lotus japonicus百脉根。名字有个Lotus居然不是睡莲科的,而是豆科的

Manihot esculenta 木薯。这个,生木薯有氰化物

Medicago truncatula蒺藜苜蓿

Mimulus guttatus野生猴面花

Mimulus lewisii刘易斯猴面花

Musa acuminata 香蕉

Oryza alta高秆野生稻

Oryza australiensis野生稻

Oryza brachyantha花药野生稻

Oryza coarctata 某种稻

Oryza glaberrima光稃稻

Oryza granulate疣粒稻

Oryza longistaminata长雄野生稻

Oryza minuta小粒野生稻

Oryza nivara印度野生稻

Oryza officinalis药用稻

Oryza punctata斑点野生稻

Oryza ridleyi野生稻

Oryza rufipogon 普通野生稻

Oryza sativa 水稻各种稻果然还是民以食为天!

Ostreococcus tauri绿藻

Panax ginseng 人参

Phaseolus vulgaris 菜豆

Prunus persica

Secale cereale 黑麦

Setaria italica

Sisymbrium irio水蒜芥

Solanum cheesmaniae 某种番茄

Solanum lycopersicum栽培番茄

Solanum pennellii野生种潘那利番茄

Solanum phureja 某种马铃薯

Solanum tuberosum 马铃薯。去年的natrue测序文章。NCBI的数据库更新不及时么?这儿只有BES的数据。

Sorghum bicolor 高粱

Sorghum propinquum拟高梁

Trifolium repens白花车轴草

Triticum aestivum 普通小麦

Triticum monococcum一粒小麦。这个名儿好玩

Vigna unguiculata豇豆

Vitis vinifera 葡萄

Zea mays 玉米

 

 

“BACENDS”目录

Apis mellifera 蜜蜂

Arabidopsis thaliana 拟南芥

Glycine max 大豆

Oryza sativa 水稻

Schistosoma mansoni曼氏血吸虫

Solanum lycopersicum

Strongylocentrotus purpuratus紫色球海胆

Triticum aestivum普通小麦

Trypanosome brucei锥虫

Trypanosome cruzi克氏锥虫

Zea mays 玉米

 

“CLONEEND”目录

Anopheles gambiae 冈比亚按蚊

Bos taurus

Canis familiaris 家犬

Cercopithecus aethiops非洲绿猴

Drosophila melanogaster 果蝇

Equus caballus普氏野马

Gallus gallus

Gasterosteus aculeatus三刺鱼

Homo sapiens

Medicago truncatula蒺藜苜蓿

Mus musculus 小鼠

Ovis aries

Pan troglodytes潘穴居人,黑猩猩

Rattus norvegicus 大鼠

Sus scrofa 野猪

Trypanosome brucei 锥虫

Xenopus tropicalis非洲爪蟾,热带爪蟾

你可能感兴趣的:(ftp)