python数据分类聚类案例_Python聚类算法之DBSACN实例分析

本文实例讲述了Python聚类算法之DBSACN。分享给大家供大家参考，具体如下：

DBSCAN：是一种简单的，基于密度的聚类算法。本次实现中，DBSCAN使用了基于中心的方法。在基于中心的方法中，每个数据点的密度通过对以该点为中心以边长为2*EPs的网格(邻域)内的其他数据点的个数来度量。根据数据点的密度分为三类点:

核心点：该点在邻域内的密度超过给定的阀值MinPs。

边界点：该点不是核心点，但是其邻域内包含至少一个核心点。

噪音点：不是核心点，也不是边界点。

有了以上对数据点的划分，聚合可以这样进行：各个核心点与其邻域内的所有核心点放在同一个簇中，把边界点跟其邻域内的某个核心点放在同一个簇中。

# scoding=utf-8

import pylab as pl

from collections import defaultdict,Counter

points = [[int(eachpoint.split("#")[0]), int(eachpoint.split("#")[1])] for eachpoint in open("points","r")]

# 计算每个数据点相邻的数据点，邻域定义为以该点为中心以边长为2*EPs的网格

Eps = 10

surroundPoints = defaultdict(list)

for idx1,point1 in enumerate(points):

for idx2,point2 in enumerate(points):

if (idx1 < idx2):

if(abs(point1[0]-point2[0])<=Eps and abs(point1[1]-point2[1])<=Eps):

surroundPoints[idx1].append(idx2)

surroundPoints[idx2].append(idx1)

# 定义邻域内相邻的数据点的个数大于4的为核心点

MinPts = 5

corePointIdx = [pointIdx for pointIdx,surPointIdxs in surroundPoints.iteritems() if len(surPointIdxs)>=MinPts]

# 邻域内包含某个核心点的非核心点，定义为边界点

borderPointIdx = []

for pointIdx,surPointIdxs in surroundPoints.iteritems():

if (pointIdx not in corePointIdx):

for onesurPointIdx in surPointIdxs:

if onesurPointIdx in corePointIdx:

borderPointIdx.append(pointIdx)

break

# 噪音点既不是边界点也不是核心点

noisePointIdx = [pointIdx for pointIdx in range(len(points)) if pointIdx not in corePointIdx and pointIdx not in borderPointIdx]

corePoint = [points[pointIdx] for pointIdx in corePointIdx]

borderPoint = [points[pointIdx] for pointIdx in borderPointIdx]

noisePoint = [points[pointIdx] for pointIdx in noisePointIdx]

# pl.plot([eachpoint[0] for eachpoint in corePoint], [eachpoint[1] for eachpoint in corePoint], 'or')

# pl.plot([eachpoint[0] for eachpoint in borderPoint], [eachpoint[1] for eachpoint in borderPoint], 'oy')

# pl.plot([eachpoint[0] for eachpoint in noisePoint], [eachpoint[1] for eachpoint in noisePoint], 'ok')

groups = [idx for idx in range(len(points))]

# 各个核心点与其邻域内的所有核心点放在同一个簇中

for pointidx,surroundIdxs in surroundPoints.iteritems():

for oneSurroundIdx in surroundIdxs:

if (pointidx in corePointIdx and oneSurroundIdx in corePointIdx and pointidx < oneSurroundIdx):

for idx in range(len(groups)):

if groups[idx] == groups[oneSurroundIdx]:

groups[idx] = groups[pointidx]

# 边界点跟其邻域内的某个核心点放在同一个簇中

for pointidx,surroundIdxs in surroundPoints.iteritems():

for oneSurroundIdx in surroundIdxs:

if (pointidx in borderPointIdx and oneSurroundIdx in corePointIdx):

groups[pointidx] = groups[oneSurroundIdx]

break

# 取簇规模最大的5个簇

wantGroupNum = 3

finalGroup = Counter(groups).most_common(3)

finalGroup = [onecount[0] for onecount in finalGroup]

group1 = [points[idx] for idx in xrange(len(points)) if groups[idx]==finalGroup[0]]

group2 = [points[idx] for idx in xrange(len(points)) if groups[idx]==finalGroup[1]]

group3 = [points[idx] for idx in xrange(len(points)) if groups[idx]==finalGroup[2]]

pl.plot([eachpoint[0] for eachpoint in group1], [eachpoint[1] for eachpoint in group1], 'or')

pl.plot([eachpoint[0] for eachpoint in group2], [eachpoint[1] for eachpoint in group2], 'oy')

pl.plot([eachpoint[0] for eachpoint in group3], [eachpoint[1] for eachpoint in group3], 'og')

# 打印噪音点，黑色

pl.plot([eachpoint[0] for eachpoint in noisePoint], [eachpoint[1] for eachpoint in noisePoint], 'ok')

pl.show()

运行效果截图如下：

希望本文所述对大家Python程序设计有所帮助。