linux学习100篇15:安装org.Hs.eg.db

安装org.Hs.eg.db

> BiocManager::install("org.Hs.eg.db")
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories'
for details

replacement repositories:
    CRAN: https://mirrors.tuna.tsinghua.edu.cn/CRAN/

Bioconductor version 3.13 (BiocManager 1.30.15), R 4.1.0 (2021-05-18)
Installing package(s) 'org.Hs.eg.db'
trying URL 'http://mirrors.tuna.tsinghua.edu.cn/bioconductor//packages/3.13/data/annotation/src/contrib/org.Hs.eg.db_3.13.0.tar.gz'
Content type 'application/x-gzip' length 83002050 bytes (79.2 MB)
==================================================
downloaded 79.2 MB

* installing *source* package ‘org.Hs.eg.db’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (org.Hs.eg.db)

The downloaded source packages are in
    ‘/tmp/RtmpvprwOn/downloaded_packages’
Installation paths not writeable, unable to update packages
  path: /usr/lib/R/library
  packages:
    spatial
> library(org.Hs.eg.db)