library("jackstraw")
Error: package or namespace load failed for ‘jackstraw’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
不存在叫‘lfa’这个名字的程辑包
In addition: Warning message:
程辑包‘jackstraw’是用R版本3.6.2 来建造的
解决方案：安装lfa即可
BiocManager::install("lfa")
Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.1 (2019-07-05)
Installing package(s) 'lfa'
trying URL 'https://mirrors.ustc.edu.cn/bioc//packages/3.10/bioc/bin/windows/contrib/3.6/lfa_1.16.0.zip'
Content type 'application/zip' length 468109 bytes (457 KB)
downloaded 457 KB
package ‘lfa’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Windows\Temp\RtmpG0hWxm\downloaded_packages
Installation path not writeable, unable to update packages:
不影响安装
annotate, AnnotationDbi,
BH, Biobase, BiocGenerics, BiocManager, BiocParallel, BiocVersion, biocViews, boot,
broom, callr, cli, clusterProfiler, covr, curl, DBI, DelayedArray, doFuture, DOSE,
DT, edgeR, enrichplot, exactRankTests, fansi, farver, fgsea, foreign, future,
future.apply, geneplotter, GenomeInfoDb, GenomeInfoDbData, GenomicRanges, ggpubr,
ggridges, globals, GO.db, GOSemSim, gplots, graph, GSEABase, GSVA, hexbin, hms,
HSMMSingleCell, IRanges, KernSmooth, knitr, limma, listenv, MASS, Matrix, metap,
mgcv, mime, monocle, mvtnorm, nlme, org.Hs.eg.db, pillar, plotly, prettyunits, purrr,
qvalue, R.oo, R.utils, R6, RBGL, RcppArmadillo, RcppEigen, Rdpack, rlang, roxygen2,
RSpectra, RSQLite, rvcheck, rversions, S4Vectors, Seurat, SingleR, singscore, slam,
SummarizedExperiment, survival, testthat, VGAM, xfun, XVector, zlibbioc
Old packages: 'bibtex', 'bit', 'caTools', 'data.table', 'digest', 'hdf5r', 'igraph',
'plyr', 'ranger', 'Rcpp', 'RcppAnnoy', 'reticulate', 'scales', 'sctransform',
'SDMTools', 'statmod', 'stringi', 'tinytex', 'uwot', 'vroom', 'zoo'
Update all/some/none? [a/s/n]:
n
library(lfa)
library("org.Mm.eg.db")
Error in library("org.Mm.eg.db") : 不存在叫‘org.Mm.eg.db’这个名字的程辑包
安装即可
BiocManager::install("org.Mm.eg.db")
Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.1 (2019-07-05)
Installing package(s) 'org.Mm.eg.db'
installing the source package ‘org.Mm.eg.db’
trying URL 'https://mirrors.ustc.edu.cn/bioc//packages/3.10/data/annotation/src/contrib/org.Mm.eg.db_3.10.0.tar.gz'
Content type 'application/gzip' length 72221575 bytes (68.9 MB)
downloaded 68.9 MB
- installing source package 'org.Mm.eg.db' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning messages:
1: 'splitAsList'存在多个方法表
2: replacing previous import 'S4Vectors::splitAsList' by 'IRanges::splitAsList' when loading 'AnnotationDbi'
** help
*** installing help indices
converting help for package 'org.Mm.eg.db'
finding HTML links ... 好了
org.Mm.egACCNUM html
org.Mm.egALIAS2EG html
org.Mm.egBASE html
org.Mm.egCHR html
org.Mm.egCHRLENGTHS html
org.Mm.egCHRLOC html
org.Mm.egENSEMBL html
org.Mm.egENSEMBLPROT html
org.Mm.egENSEMBLTRANS html
org.Mm.egENZYME html
org.Mm.egGENENAME html
org.Mm.egGO html
org.Mm.egMAPCOUNTS html
org.Mm.egMGI html
org.Mm.egORGANISM html
org.Mm.egPATH html
org.Mm.egPFAM html
org.Mm.egPMID html
org.Mm.egPROSITE html
org.Mm.egREFSEQ html
org.Mm.egSYMBOL html
org.Mm.egUNIGENE html
org.Mm.egUNIPROT html
org.Mm.eg_dbconn html
** building package indices
** testing if installed package can be loaded from temporary location
Warning: multiple methods tables found for 'splitAsList'
Warning: replacing previous import 'S4Vectors::splitAsList' by 'IRanges::splitAsList' when loading 'AnnotationDbi'
** testing if installed package can be loaded from final location
Warning: multiple methods tables found for 'splitAsList'
Warning: replacing previous import 'S4Vectors::splitAsList' by 'IRanges::splitAsList' when loading 'AnnotationDbi'
** testing if installed package keeps a record of temporary installation path - DONE (org.Mm.eg.db)
The downloaded source packages are in
‘C:\Windows\Temp\RtmpG0hWxm\downloaded_packages’
Installation path not writeable, unable to update packages: annotate, AnnotationDbi,
BH, Biobase, BiocGenerics, BiocManager, BiocParallel, BiocVersion, biocViews, boot,
broom, callr, cli, clusterProfiler, covr, curl, DBI, DelayedArray, doFuture, DOSE,
DT, edgeR, enrichplot, exactRankTests, fansi, farver, fgsea, foreign, future,
future.apply, geneplotter, GenomeInfoDb, GenomeInfoDbData, GenomicRanges, ggpubr,
ggridges, globals, GO.db, GOSemSim, gplots, graph, GSEABase, GSVA, hexbin, hms,
HSMMSingleCell, IRanges, KernSmooth, knitr, limma, listenv, MASS, Matrix, metap,
mgcv, mime, monocle, mvtnorm, nlme, org.Hs.eg.db, pillar, plotly, prettyunits, purrr,
qvalue, R.oo, R.utils, R6, RBGL, RcppArmadillo, RcppEigen, Rdpack, rlang, roxygen2,
RSpectra, RSQLite, rvcheck, rversions, S4Vectors, Seurat, SingleR, singscore, slam,
SummarizedExperiment, survival, testthat, VGAM, xfun, XVector, zlibbioc
Old packages: 'bibtex', 'bit', 'caTools', 'data.table', 'digest', 'hdf5r', 'igraph',
'plyr', 'ranger', 'Rcpp', 'RcppAnnoy', 'reticulate', 'scales', 'sctransform',
'SDMTools', 'statmod', 'stringi', 'tinytex', 'uwot', 'vroom', 'zoo'
Update all/some/none? [a/s/n]:
Update all/some/none? [a/s/n]:
n
library(org.Mm.eg.db)
载入需要的程辑包：AnnotationDbi
载入需要的程辑包：IRanges
载入需要的程辑包：S4Vectors
载入程辑包：‘S4Vectors’
The following object is masked from ‘package:arules’:
decode
The following object is masked from ‘package:gplots’:
space
The following object is masked from ‘package:Matrix’:
expand
The following object is masked from ‘package:base’:
expand.grid
载入程辑包：‘IRanges’
The following object is masked from ‘package:S4Vectors’:
splitAsList
The following object is masked from ‘package:arules’:
coverage
The following object is masked from ‘package:destiny’:
distance
The following object is masked from ‘package:grDevices’:
windows