UGENE - Integrated Bioinformatics Tools

UGENE - Integrated Bioinformatics Tools

 

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News September 20, 2011 UGENE 1.9.7 is released August 23, 2011 UGENE 1.9.6 is released July 27, 2011 UGENE at the BOSC-2011 July 25, 2011 UGENE 1.9.5 and changes in the release cycle July 12, 2011 UGENE 1.9.4 is released July 6, 2011 UGENE on the Illumina iDEA 2011 Conference June 3, 2011 Workshop on UGENE was held in Novisibirsk State University May 23, 2011 UGENE 1.9.3 is released April 7, 2011 UGENE wins award in a contest devoted to GPU computations March 24, 2011 UGENE 1.9.2 is released March 15, 2011 UGENE bug-tracker is open for public February 7, 2011 UGENE 1.9.1 is released December 25, 2010 Development snapshots are available December 21, 2010 UGENE wins the Best Open Source Project contest December 17, 2010 What's new in UGENE 1.9 video December 15, 2010 UGENE 1.9.0 is released November 3, 2010 UGENE wins award at contest held by Intel and Rusnano

Unipro UGENE: Integrated Bioinformatics Tools UGENE is a free cross-platform genome analysis suite.  It works perfectly on Windows, Mac OS or Linux and requires only a few clicks to install. Features Screenshots    Swine flu in UGENE    Assembly Browser    Workflow Designer    Multiple alignment Integrated tools Multiple sequence alignment using MUSCLE 3, KAlign, Clustal; HMM profiles build and search, based on the source of HMMER 2 and HMMER 3; PCR Primers design using Primer 3; Cloning in silico capabilities; Queries to NCBI BLAST and CDD databases; Protein secondary structure prediction using GOR IV and PSIPRED; Phylogenetic analysis with Phylip; Search for restriction enzymes and integration with REBASE; Extremely fast repeat finder; DNA short reads to reference alignment using Bowtie; De novo assembly with CAP3; Search for transcription factor binding sites using SITECON; Protein back translation; ORF finder; Complete Smith-Waterman algorithm implementation; Support for external tools: BLAST+, MAFFT, T-Coffee; Assembly Browser — a shiny BAM viewer. User interface Visual and interactive genome browsing including circular plasmid view; Multiple alignment editor; Chromatograms visualization; 3D viewer for files in PDB and MMDB formats with anaglyph stereo mode support; Phylogenetic tree viewer; Dot plot visualization; Query designer enables search for complex annotation patterns; Easy to use workflow designer for custom computational workflows. High performance computing in UGENE Complete support of modern multicore processors and SSE instructions; Out of the box support of modern GPUs using NVIDIA CUDA and ATI Stream; Support for cloud computing: running computational tasks on Amazon EC2 cloud; Support for supercomputers and distributed computing. Cooperation Can be used for education purposes in schools and universities; Features to be included into the next release are initiated by users; UGENE team is ready for collaboration in related projects, both free or commercial. Availability Unipro UGENE is a free software distributed under the terms of GNU General Public License. Prebuilt version for set of operating systems can be foundhere. Contact us to learn more about alternative licensing terms.

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UniPro, Russia, 2008–2011