各基因组数据库

基因组对应关系：

hg

mm

1.UCSC：

table-browser：https://genome.ucsc.edu/cgi-bin/hgTables

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总ftp：ftp://hgdownload.soe.ucsc.edu/goldenPath

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web-human：http://hgdownload.cse.ucsc.edu/downloads.html#human

ftp-hg38：ftp://hgdownload.soe.ucsc.edu/goldenPath/hg38/

ftp-hg19：ftp://hgdownload.soe.ucsc.edu/goldenPath/hg19/

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ftp-mm10: ftp://hgdownload.soe.ucsc.edu/goldenPath/mm10/

ftp-mm9:ftp://hgdownload.soe.ucsc.edu/goldenPath/mm9/

web-mouse: http://hgdownload.cse.ucsc.edu/downloads.html#mouse

2.Ensembl：

web:https://www.ensembl.org/info/data/ftp/index.html

ftp:ftp://ftp.ensembl.org/pub/

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ftp-release94-GRCh38-fa:ftp://ftp.ensembl.org/pub/release-94/fasta/homo_sapiens/

ftp-release94-GRCh38-gtf:ftp://ftp.ensembl.org/pub/release-94/gtf/homo_sapiens/

ftp-release94-GRCh38-gff3:ftp://ftp.ensembl.org/pub/release-94/gff3/homo_sapiens/

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ftp-release94-GRCm38-fa: ftp://ftp.ensembl.org/pub/release-94/fasta/mus_musculus/

ftp-release94-GRCm38-gtf: ftp://ftp.ensembl.org/pub/release-94/gtf/mus_musculus/

ftp-release94-GRCm38-gff3:ftp://ftp.ensembl.org/pub/release-94/gtf/mus_musculus/

3.Gencode:

web-mouse-GRCm38： https://www.gencodegenes.org/mouse/

web-human-GRCh37： https://www.gencodegenes.org/human/release_29lift37.html

ftp-gencode: ftp://ftp.ebi.ac.uk/pub/databases/gencode

4.NCBI:

human: ftp://ftp.ncbi.nih.gov/genomes/H_sapiens/

mouse: ftp://ftp.ncbi.nih.gov/genomes/M_musculus/

NCBI的注释文件只有gff3