HDF5 library version mismatched error

运行tensorflow,报错如下:

Warning! ***HDF5 library version mismatched error***
The HDF5 header files used to compile this application do not match
the version used by the HDF5 library to which this application is linked.
Data corruption or segmentation faults may occur if the application continues.
This can happen when an application was compiled by one version of HDF5 but
linked with a different version of static or shared HDF5 library.
You should recompile the application or check your shared library related
settings such as 'LD_LIBRARY_PATH'.
You can, at your own risk, disable this warning by setting the environment
variable 'HDF5_DISABLE_VERSION_CHECK' to a value of '1'.
Setting it to 2 or higher will suppress the warning messages totally.
Headers are 1.10.4, library is 1.10.5
        SUMMARY OF THE HDF5 CONFIGURATION
        =================================

General Information:
-------------------
                   HDF5 Version: 1.10.5
                  Configured on: 2019-03-04
                  Configured by: Visual Studio 14 2015 Win64
                    Host system: Windows-10.0.17763
              Uname information: Windows
                       Byte sex: little-endian
             Installation point: C:/Program Files/HDF5

Compiling Options:
------------------
                     Build Mode:
              Debugging Symbols:
                        Asserts:
                      Profiling:
             Optimization Level:

Linking Options:
----------------
                      Libraries:
  Statically Linked Executables: OFF
                        LDFLAGS: /machine:x64
                     H5_LDFLAGS:
                     AM_LDFLAGS:
                Extra libraries:
                       Archiver:
                         Ranlib:

Languages:
----------
                              C: yes
                     C Compiler: C:/Program Files (x86)/Microsoft Visual Studio 14.0/VC/bin/x86_amd64/cl.exe 19.0.24218.1
                       CPPFLAGS:
                    H5_CPPFLAGS:
                    AM_CPPFLAGS:
                         CFLAGS:  /DWIN32 /D_WINDOWS /W3
                      H5_CFLAGS:
                      AM_CFLAGS:
               Shared C Library: YES
               Static C Library: YES

                        Fortran: OFF
               Fortran Compiler:
                  Fortran Flags:
               H5 Fortran Flags:
               AM Fortran Flags:
         Shared Fortran Library: YES
         Static Fortran Library: YES

                            C++: ON
                   C++ Compiler: C:/Program Files (x86)/Microsoft Visual Studio 14.0/VC/bin/x86_amd64/cl.exe 19.0.24218.1
                      C++ Flags: /DWIN32 /D_WINDOWS /W3 /GR /EHsc
                   H5 C++ Flags:
                   AM C++ Flags:
             Shared C++ Library: YES
             Static C++ Library: YES

                            JAVA: OFF
                   JAVA Compiler:

Features:
---------
                   Parallel HDF5: OFF
Parallel Filtered Dataset Writes:
              Large Parallel I/O:
              High-level library: ON
                    Threadsafety: OFF
             Default API mapping: v110
  With deprecated public symbols: ON
          I/O filters (external):  DEFLATE DECODE ENCODE
                             MPE:
                      Direct VFD:
                         dmalloc:
  Packages w/ extra debug output:
                     API Tracing: OFF
            Using memory checker: OFF
 Memory allocation sanity checks: OFF
          Function Stack Tracing: OFF
       Strict File Format Checks: OFF
    Optimization Instrumentation:
Bye...

解决方法:

conda install hdf5=1.10.5 -c conda-forge   # 将hdf5的版本更新到1.10.5,用conda list命令查看是1.10.4

-c表示–channel,表示包hdf5包被指定从conda-forge这个channel下载。目前anaconda源中hdf5最高版本为1.10.4,因此要指定为conda-forge源。

最开始用的conda update hdf5=1.10.5 -c conda-forge命令,报错了,于是改成了install 。
注意一定要用conda命令,从下图可以看到hdf5会涉及到很多相关联的包,用conda命令才能同步更新这些包。
HDF5 library version mismatched error_第1张图片

Python环境中HDF5报错:HDF5 library version mismatched error

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