安装org.Mm.eg.db
> BiocManager::install("org.Mm.eg.db")
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories'
for details
replacement repositories:
CRAN: https://mirrors.tuna.tsinghua.edu.cn/CRAN/
Bioconductor version 3.13 (BiocManager 1.30.15), R 4.1.0 (2021-05-18)
Installing package(s) 'org.Mm.eg.db'
trying URL 'http://mirrors.tuna.tsinghua.edu.cn/bioconductor//packages/3.13/data/annotation/src/contrib/org.Mm.eg.db_3.13.0.tar.gz'
Content type 'application/x-gzip' length 74461267 bytes (71.0 MB)
==================================================
downloaded 71.0 MB
* installing *source* package ‘org.Mm.eg.db’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (org.Mm.eg.db)
The downloaded source packages are in
‘/tmp/RtmpvprwOn/downloaded_packages’
Installation paths not writeable, unable to update packages
path: /usr/lib/R/library
packages:
spatial
> #library(org.Hs.eg.db)#修改
> library(org.Mm.eg.db)
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport,
clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply,
parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname,
do.call, duplicated, eval, evalq, Filter, Find, get, grep, grepl,
intersect, is.unsorted, lapply, Map, mapply, match, mget, order, paste,
pmax, pmax.int, pmin, pmin.int, Position, rank, rbind, Reduce, rownames,
sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max,
which.min
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with 'browseVignettes()'. To
cite Bioconductor, see 'citation("Biobase")', and for packages
'citation("pkgname")'.
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:clusterProfiler’:
rename
The following objects are masked from ‘package:base’:
expand.grid, I, unname
Attaching package: ‘IRanges’
The following object is masked from ‘package:clusterProfiler’:
slice
Attaching package: ‘AnnotationDbi’
The following object is masked from ‘package:clusterProfiler’:
select
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