BiocManager::install('FlowSOM')

> install.packages('FlowSOM')
Installing package into '/home/rstudio/R/x86_64-pc-linux-gnu-library/4.1'
(as 'lib' is unspecified)
Warning in install.packages :
  package 'FlowSOM' is not available for this version of R

A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
> BiocManager::install('FlowSOM')
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for
details

replacement repositories:
    CRAN: https://cloud.r-project.org

Bioconductor version 3.14 (BiocManager 1.30.16), R 4.1.1 (2021-08-10)
Installing package(s) 'FlowSOM'
trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/FlowSOM_2.2.0.tar.gz'
Content type 'application/x-gzip' length 6074834 bytes (5.8 MB)
==================================================
downloaded 5.8 MB

* installing *source* package 'FlowSOM' ...
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-QwogzP/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c som.c -o som.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o FlowSOM.so som.o -L/usr/lib/R/lib -lR
installing to /home/rstudio/R/x86_64-pc-linux-gnu-library/4.1/00LOCK-FlowSOM/00new/FlowSOM/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FlowSOM)

The downloaded source packages are in
    '/tmp/RtmpqOB5Ww/downloaded_packages'
Installation paths not writeable, unable to update packages
  path: /usr/lib/R/library
  packages:
    MASS, Matrix, class, cluster, foreign, lattice, mgcv, nlme, nnet, rpart, spatial, survival
> library(FlowSOM)
Loading required package: igraph

Attaching package: 'igraph'

The following object is masked from 'package:flowCore':

    normalize

The following object is masked from 'package:GenomicRanges':

    union

The following object is masked from 'package:IRanges':

    union

The following object is masked from 'package:S4Vectors':

    union

The following objects are masked from 'package:BiocGenerics':

    normalize, path, union

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

Thanks for using FlowSOM. From version 2.1.4 on, the scale 
parameter in the FlowSOM function defaults to FALSE
>