3d slicer 替代软件——ITK-SNAP

download网址：https://sourceforge.net/projects/itk-snap/

网页界面：

 

显示3d的操作方式

1）保存原始图像、预测图像、mask的nii文件

def colorize(n, images, logits, targets):
    outputs = torch.argmax(logits, dim=1, keepdim=False).type(torch.uint8)  
    targets = targets.type(torch.uint8)
    outputs = np.array(outputs[0,...])  # choose one to show
    targets = np.array(targets[0,...])
    img = sitk.GetImageFromArray(outputs * 64)
    sitk.WriteImage(img, root + 'img' + str(n) + '_src.nii.gz')
    out = sitk.GetImageFromArray(outputs * 64)
    sitk.WriteImage(out, root+'img'+str(n)+'_pred.nii.gz')
    mask = sitk.GetImageFromArray(targets * 64)
    sitk.WriteImage(mask, root + 'img' + str(n) + '_mask.nii.gz')
    print('save done')
    return 0

2）在软件中打开img_src.nii，作为主图像

3）将pred或者mask图像拖到软件中，作为segmentation导入

4）点击下方的continue update