RNA三维结构预测与比较

Pymol使用

二级结构预测

首先用RNAfold预测二级结构

三级结构预测

接着使用farfar2预测三级级结构，输入RNA序列和预测的二级结构，

输入序列

最后用ARES打分挑出最好模型

RNA-protein docking

http://hdock.phys.hust.edu.cn/
https://gramm.compbio.ku.edu/request
http://genesilico.pl/NPDock
http://biophy.hust.edu.cn/new/3dRPC

RNA-RNA alignment

RNA-align/
MultiSETTER #compare two rna structure

RNA比较

其他工具

PDB: https://www.rcsb.org/
RNAcentral: https://rnacentral.org/
RFAM: https://rfam.xfam.org/
RNAstrand: http://www.rnasoft.ca/strand/
RNAfold: http://rna.tbi.univie.ac.at/cgi-bin/RNAWebSuite/RNAfold.cgi
RNAview: http://ndbserver.rutgers.edu/ndbmodule/services/download/rnaview.html
RNApdbee: http://rnapdbee.cs.put.poznan.pl/
dot2CT https://rna.urmc.rochester.edu/RNAstructureWeb/Servers/dot2ct/dot2ct.html
Forna http://rna.tbi.univie.ac.at/forna/
RNA2Drawer: https://rna2drawer.app/
Pseudoviewer: http://pseudoviewer.inha.ac.kr/
Rchie: https://www.e-rna.org/r-chie/
iDotter: https://idotter.sca-ds.de/view
Rchie:https://www.e-rna.org/r-chie/
RNApdbee:http://rnapdbee.cs.put.poznan.pl/
Ribosketch: https://rnastructure.cancer.gov/ribosketch/ribosketch.html
R2DT: https://rnacentral.org/r2dt
PDBe: https://www.ebi.ac.uk/pdbe/about/news/rna-topology-viewer-added-pdbe-pages
rPredictorDB: http://rpredictordb.elixir-czech.cz/predict#cppredict2