| kind |
The resource type. |
| aliquots[] |
List of barcodes of aliquots taken from this participant. |
| clinical_data |
The clinical data about the participant. |
| clinical_data.ParticipantBarcode |
Participant barcode. |
| clinical_data.Project |
Project name, .eg. “TCGA”. |
| clinical_data.Study |
Tumor type abbreviation, e.g. “BRCA”. |
| clinical_data.age_at_initial_pathologic_diagnosis |
Age at which a condition or disease was first diagnosed in years. |
| clinical_data.anatomic_neoplasm_subdivision |
Text term to describe the spatial location, subdivisions and/or anatomic site name of a tumor. |
| clinical_data.batch_number |
Groups samples by the batch they were processed in. |
| clinical_data.bcr |
Biospecimen core resource, e.g. “Nationwide Children’s Hospital”, “Washington University”. |
| clinical_data.clinical_M |
Extent of the distant metastasis for the cancer based on evidence obtained from clinical assessment parameters determined prior to treatment. |
| clinical_data.clinical_N |
Extent of the regional lymph node involvement for the cancer based on evidence obtained from clinical assessment parameters determined prior to treatment. |
| clinical_data.clinical_T |
Extent of the primary cancer based on evidence obtained from clinical assessment parameters determined prior to treatment. |
| clinical_data.clinical_stage |
Stage group determined from clinical information on the tumor (T), regional node (N) and metastases (M) and by grouping cases with similar prognosis for cancer. |
| clinical_data.colorectal_cancer |
Text term to signify whether a patient has been diagnosed with colorectal cancer. |
| clinical_data.country |
Text to identify the name of the state, province, or country in which the sample was procured. |
| clinical_data.days_to_birth |
Time interval from a person’s date of birth to the date of initial pathologic diagnosis, represented as a calculated number of days. |
| clinical_data.days_to_initial_pathologic_diagnosis |
Numeric value to represent the day of an individual’s initial pathologic diagnosis of cancer. |
| clinical_data.days_to_last_followup |
Time interval from the date of last followup to the date of initial pathologic diagnosis, represented as a calculated number of days. |
| clinical_data.ethnicity |
The text for reporting information about ethnicity based on the Office of Management and Budget (OMB) categories. |
| clinical_data.frozen_specimen_anatomic_site |
Text description of the origin and the anatomic site regarding the frozen biospecimen tumor tissue sample. |
| clinical_data.gender |
Text designations that identify gender. |
| clinical_data.histological_type |
Text term for the structural pattern of cancer cells used to define a microscopic diagnosis. |
| clinical_data.history_of_colon_polyps |
Yes/No indicator to describe if the subject had a previous history of colon polyps as noted in the history/physical or previous endoscopic report(s). |
| clinical_data.history_of_neoadjuvant_treatment |
Text term to describe the patient’s history of neoadjuvant treatment and the kind of treament given prior to resection of the tumor. |
| clinical_data.history_of_prior_malignancy |
Text term to describe the patient’s history of prior cancer diagnosis and the spatial location of any previous cancer occurrence. |
| clinical_data.hpv_calls |
Results of HPV tests. |
| clinical_data.hpv_status |
Current HPV status. |
| clinical_data.icd_10 |
The tenth version of the International Classification of Disease (ICD). |
| clinical_data.icd_o_3_histology |
The third edition of the International Classification of Diseases for Oncology. |
| clinical_data.icd_o_3_site |
The third edition of the International Classification of Diseases for Oncology. |
| clinical_data.lymphatic_invasion |
A yes/no indicator to ask if malignant cells are present in small or thin-walled vessels suggesting lymphatic involvement. |
| clinical_data.lymphnodes_examined |
The yes/no/unknown indicator whether a lymph node assessment was performed at the primary presentation of disease. |
| clinical_data.lymphovascular_invasion_present |
The yes/no indicator to ask if large vessel (vascular) invasion or small, thin-walled (lymphatic) invasion was detected in a tumor specimen. |
| clinical_data.menopause_status |
Text term to signify the status of a woman’s menopause, the permanent cessation of menses, usually defined by 6 to 12 months of amenorrhea. |
| clinical_data.mononucleotide_and_dinucleotide_marker_panel_analysis_status |
Text result of microsatellite instability (MSI) testing at using a mononucleotide and dinucleotide microsatellite panel. |
| clinical_data.mononucleotide_marker_panel_analysis_status |
Text result of microsatellite instability (MSI) testing using a mononucleotide microsatellite panel. |
| clinical_data.neoplasm_histologic_grade |
Numeric value to express the degree of abnormality of cancer cells, a measure of differentiation and aggressiveness. |
| clinical_data.new_tumor_event_after_initial_treatment |
Yes/No/Unknown indicator to identify whether a patient has had a new tumor event after initial treatment. |
| clinical_data.number_of_lymphnodes_examined |
The total number of lymph nodes removed and pathologically assessed for disease. |
| clinical_data.number_of_lymphnodes_positive_by_he |
Numeric value to signify the count of positive lymph nodes identified through hematoxylin and eosin (H&E) staining light microscopy. |
| clinical_data.pathologic_M |
Code to represent the defined absence or presence of distant spread or metastases (M) to locations via vascular channels or lymphatics beyond the reg... |
| clinical_data.pathologic_N |
The codes that represent the stage of cancer based on the nodes present (N stage) according to criteria based on multiple editions of the AJCC’s Cance... |
| clinical_data.pathologic_stage |
The extent of a cancer, especially whether the disease has spread from the original site to other parts of the body based on AJCC staging criteria. |
| clinical_data.pathologic_T |
Code of pathological T (primary tumor) to define the size or contiguous extension of the primary tumor (T), using staging criteria from the American ... |
| clinical_data.person_neoplasm_cancer_status |
The state or condition of an individual’s neoplasm at a particular point in time. |
| clinical_data.pregnancies |
Value to describe the number of full-term pregnancies that a woman has experienced. |
| clinical_data.primary_neoplasm_melanoma_dx |
Text indicator to signify whether a person had a primary diagnosis of melanoma. |
| clinical_data.primary_therapy_outcome_success |
Measure of Success |
| clinical_data.prior_dx |
Text term to describe the patient’s history of prior cancer diagnosis and the spatial location of any previous cancer occurrence. |
| clinical_data.race |
The text for reporting information about race based on the Office of Management and Budget (OMB) categories. |
| clinical_data.residual_tumor |
Text terms to describe the status of a tissue margin following surgical resection. |
| clinical_data.tobacco_smoking_history |
Category describing current smoking status and smoking history as self-reported by a patient. |
| clinical_data.tumor_tissue_site |
Text term that describes the anatomic site of the tumor or disease. |
| clinical_data.tumor_type |
Text term to identify the morphologic subtype of papillary renal cell carcinoma. |
| clinical_data.vital_status |
The survival state of the person registered on the protocol. |
| clinical_data.weiss_venous_invasion |
The result of an assessment using the Weiss histopathologic criteria. |
| clinical_data.year_of_initial_pathologic_diagnosis |
Numeric value to represent the year of an individual’s initial pathologic diagnosis of cancer. |
| samples[] |
List of barcodes of samples taken from this participant. |
