(转)R警告处理

程序员的3个美德,其中之一就是懒惰,凡是不影响大局的代码警告我都懒得去解决,比如每次启动R语言都会有:

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

During startup - Warning messages:
1: Setting LC_CTYPE failed, using "C" 
2: Setting LC_COLLATE failed, using "C" 
3: Setting LC_TIME failed, using "C" 
4: Setting LC_MESSAGES failed, using "C" 
5: Setting LC_MONETARY failed, using "C" 

这样的警告信息,因为不影响R的继续使用,所以我通常是视而不见。

但是在安装一个R包的时候终于开始报错了,而且错误信息表明是之前的这个警告:

> devtools::install_github("mskcc/pctGCdata")
Downloading GitHub repo mskcc/pctGCdata@master
tar: Failed to set default locale
tar: Failed to set default locale
   During startup - Warning messages:
   1: Setting LC_CTYPE failed, using "C" 
   2: Setting LC_TIME failed, using "C" 
   3: Setting LC_MESSAGES failed, using "C" 
   4: Setting LC_MONETARY failed, using "C" 
v  checking for file '/private/var/folders/2x/l4fzfvy17gz94j1sz6klhyjh0000gn/T/RtmpH50TBq/remotes4f18707324d6/mskcc-pctGCdata-c199831/DESCRIPTION' ...
-  preparing 'pctGCdata':
v  checking DESCRIPTION meta-information ...
-  installing the package to process help pages
-  saving partial Rd database (2m 1.2s)
-  checking for LF line-endings in source and make files and shell scripts
-  checking for empty or unneeded directories
-  looking to see if a 'data/datalist' file should be added
-  building 'pctGCdata_0.2.0.tar.gz'

Error: (converted from warning) Setting LC_CTYPE failed, using "C"
Execution halted
Error in i.p(...) : 
  (converted from warning) installation of package '/var/folders/2x/l4fzfvy17gz94j1sz6klhyjh0000gn/T//RtmpH50TBq/file4f18184bb97f/pctGCdata_0.2.0.tar.gz' had non-zero exit status

所以迫使我不得不去搜索解决方案,查到:

https://stackoverflow.com/questions/9689104/installing-r-on-mac-warning-messages-setting-lc-ctype-failed-using-c 这样的MAC解决方案,所以我打开我的mac终端,去敲入代码:

defaults write org.R-project.R force.LANG en_US.UTF-8

然后重启R语言,再次进入代码编辑器,重新安装这个R包,解决问题!!!

成功安装信息如下:

> devtools::install_github("mskcc/pctGCdata")
Downloading GitHub repo mskcc/pctGCdata@master
✔  checking for file ‘/private/var/folders/2x/l4fzfvy17gz94j1sz6klhyjh0000gn/T/RtmpUXwAea/remotes51b3692788c/mskcc-pctGCdata-c199831/DESCRIPTION’ ...
─  preparing ‘pctGCdata’:
✔  checking DESCRIPTION meta-information ...
─  installing the package to process help pages
─  saving partial Rd database (2m 3.6s)
─  checking for LF line-endings in source and make files and shell scripts
─  checking for empty or unneeded directories
─  looking to see if a ‘data/datalist’ file should be added
─  building ‘pctGCdata_0.2.0.tar.gz’
installing source package ‘pctGCdata’ …
R
data
** moving datasets to lazyload DB
byte-compile and prepare package for lazy loading
help
* installing help indices
building package indices
** testing if installed package can be loaded
* DONE (pctGCdata)

很有趣,为什么之前没有啥影响的警告在这个时候就成了致命的错误呢?

参考自:https://cloud.tencent.com/developer/article/1369812

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