集群任务提交及相关命令

~ 代表根目录 /public/home/wangyantao/

#任务提交命令

qsub -l mem=1G,nodes=1:ppn=1 *.sh (#*.sh代表脚本)

ll #根目录下的文件

less #查看脚本文件内容#

vim

star建索引

以下是脚本信息

/public/home/liuxiaofeng/biosoft/STAR-master/bin/Linux_x86_64_static/STAR --runThreadN 4 --runMode genomeGenerate --genomeDir $path/04.00.star.index/ref.fa --genomeFastaFiles $path/00.ref/*.fasta --sjdbGTFfile $path/00.ref/*.gff3

/public/home/liuxiaofeng/biosoft/STAR-master/bin/Linux_x86_64_static/STAR --runThreadN 4 --runMode genomeGenerate --genomeDir ref.fa --genomeFastaFiles /vol3/agis/zhoushaoqun_group/wangyantao/reference/S_aethiopicum_genome_fasta --sjdbGTFfile /vol3/agis/zhoushaoqun_group/wangyantao/reference/S_aeth_gene.gff

/public/home/liuxiaofeng/biosoft/STAR-master/bin/Linux_x86_64_static/STAR --runThreadN 4 --runMode genomeGenerate --limitGenomeGenerateRAM 115005046144 --genomeDir ref.fa --genomeFastaFiles /vol3/agis/zhoushaoqun_group/wangyantao/reference/S_aethiopicum_genome_fasta --sjdbGTFfile /vol3/agis/zhoushaoqun_group/wangyantao/reference/S_aeth_gene.gff