Adam学习18之在window下用eclipse中的maven插件进行编译打包

之前老在eclipse下无法用maven编译成功，在直接使用maven时候（参考【1】）就可以在eclipse下用maven编译打包了：

原因分析：使用eclipse中的maven插件老是报错，有些插件下不下来，本地使用maven之后把插件下载下来之后在用eclipse编译时依赖包就有了，就可以运行了。

pom.xml->run as ->build->mvn clean package -DskipTests  

记录：

[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ADAM_2.10
[INFO] ADAM_2.10: Core
[INFO] ADAM_2.10: APIs for Java
[INFO] ADAM_2.10: CLI
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.10 0.19.0
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.6.1:clean (default-clean) @ adam-parent_2.10 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent_2.10 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent_2.10 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent_2.10 ---
[INFO] Modified 0 of 199 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent_2.10 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent_2.10 ---
[INFO] No sources to compile
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.10: Core 0.19.0
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.6.1:clean (default-clean) @ adam-core_2.10 ---
[INFO] Deleting D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-core\target
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core_2.10 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core_2.10 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:1.9.1:add-source (add-source) @ adam-core_2.10 ---
[INFO] Source directory: D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-core\src\main\scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core_2.10 ---
[INFO] Modified 0 of 159 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:2.7:resources (default-resources) @ adam-core_2.10 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core_2.10 ---
[WARNING]  Expected all dependencies to require Scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-misc_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-misc_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-metrics_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-io_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-cli_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.scoverage:scalac-scoverage-plugin_2.10:1.1.1 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.adam:adam-core_2.10:0.19.0 requires scala version: 2.10.4
[WARNING]  com.twitter:chill_2.10:0.5.0 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-remote_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-actor_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-slf4j_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  org.apache.spark:spark-core_2.10:1.5.2 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-jackson_2.10:3.2.10 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-core_2.10:3.2.10 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-ast_2.10:3.2.10 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-core_2.10:3.2.10 requires scala version: 2.10.0
[WARNING] Multiple versions of scala libraries detected!
[INFO] D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-core\src\main\java:-1: info: compiling
[INFO] D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-core\src\main\scala:-1: info: compiling
[INFO] Compiling 108 source files to D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-core\target\scala-2.10.4\classes at 1463049475882
[WARNING] warning: there were 37 deprecation warning(s); re-run with -deprecation for details
[WARNING] warning: there were 33 feature warning(s); re-run with -feature for details
[WARNING] two warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 68 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ adam-core_2.10 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 2 source files to D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-core\target\scala-2.10.4\classes
[INFO] 
[INFO] --- build-helper-maven-plugin:1.9.1:add-test-source (add-test-source) @ adam-core_2.10 ---
[INFO] Test Source directory: D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-core\src\test\scala added.
[INFO] 
[INFO] --- maven-resources-plugin:2.7:testResources (default-testResources) @ adam-core_2.10 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 65 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core_2.10 ---
[WARNING]  Expected all dependencies to require Scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-misc_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-misc_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-metrics_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-io_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.utils:utils-cli_2.10:0.2.4 requires scala version: 2.10.4
[WARNING]  org.scoverage:scalac-scoverage-plugin_2.10:1.1.1 requires scala version: 2.10.4
[WARNING]  org.bdgenomics.adam:adam-core_2.10:0.19.0 requires scala version: 2.10.4
[WARNING]  com.twitter:chill_2.10:0.5.0 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-remote_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-actor_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-slf4j_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  org.apache.spark:spark-core_2.10:1.5.2 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-jackson_2.10:3.2.10 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-core_2.10:3.2.10 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-ast_2.10:3.2.10 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-core_2.10:3.2.10 requires scala version: 2.10.0
[WARNING] Multiple versions of scala libraries detected!
[INFO] D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-core\src\test\scala:-1: info: compiling
[INFO] Compiling 53 source files to D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-core\target\scala-2.10.4\test-classes at 1463049555049
[WARNING] D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-core\src\test\scala\org\bdgenomics\adam\rdd\read\recalibration\BaseQualityRecalibrationSuite.scala:38: warning: object DecadentRead in package rich is deprecated: Use RichAlignmentRecord wherever possible in new development.
[WARNING]     val bqsr = new BaseQualityRecalibration(cloy(reads), snps)
[WARNING]                                             ^
[WARNING] D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-core\src\test\scala\org\bdgenomics\adam\rdd\read\recalibration\BaseQualityRecalibrationSuite.scala:58: warning: object DecadentRead in package rich is deprecated: Use RichAlignmentRecord wherever possible in new development.
[WARNING]     val bqsr = new BaseQualityRecalibration(cloy(reads), snps)
[WARNING]                                             ^
[WARNING] warning: there were 1 feature warning(s); re-run with -feature for details
[WARNING] three warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 68 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ adam-core_2.10 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:2.18.1:test (default-test) @ adam-core_2.10 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:1.0:test (test) @ adam-core_2.10 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:2.6:jar (default-jar) @ adam-core_2.10 ---
[INFO] Building jar: D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-core\target\adam-core_2.10-0.19.0.jar
[INFO] 
[INFO] --- maven-jar-plugin:2.6:test-jar (default) @ adam-core_2.10 ---
[INFO] Building jar: D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-core\target\adam-core_2.10-0.19.0-tests.jar
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.10: APIs for Java 0.19.0
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.6.1:clean (default-clean) @ adam-apis_2.10 ---
[INFO] Deleting D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-apis\target
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis_2.10 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis_2.10 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:1.9.1:add-source (add-source) @ adam-apis_2.10 ---
[INFO] Source directory: D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-apis\src\main\scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis_2.10 ---
[INFO] Modified 0 of 4 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:2.7:resources (default-resources) @ adam-apis_2.10 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-apis\src\main\resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis_2.10 ---
[WARNING]  Expected all dependencies to require Scala version: 2.10.4
[WARNING]  com.twitter:chill_2.10:0.5.0 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-remote_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-actor_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-slf4j_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  org.apache.spark:spark-core_2.10:1.5.2 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-jackson_2.10:3.2.10 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-core_2.10:3.2.10 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-ast_2.10:3.2.10 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-core_2.10:3.2.10 requires scala version: 2.10.0
[WARNING] Multiple versions of scala libraries detected!
[INFO] D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-apis\src\main\scala:-1: info: compiling
[INFO] Compiling 3 source files to D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-apis\target\scala-2.10.4\classes at 1463049629270
[WARNING] warning: there were 2 feature warning(s); re-run with -feature for details
[WARNING] one warning found
[INFO] prepare-compile in 0 s
[INFO] compile in 6 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ adam-apis_2.10 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:1.9.1:add-test-source (add-test-source) @ adam-apis_2.10 ---
[INFO] Test Source directory: D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-apis\src\test\scala added.
[INFO] 
[INFO] --- maven-resources-plugin:2.7:testResources (default-testResources) @ adam-apis_2.10 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-apis\src\test\resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis_2.10 ---
[WARNING]  Expected all dependencies to require Scala version: 2.10.4
[WARNING]  com.twitter:chill_2.10:0.5.0 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-remote_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-actor_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-slf4j_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  org.apache.spark:spark-core_2.10:1.5.2 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-jackson_2.10:3.2.10 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-core_2.10:3.2.10 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-ast_2.10:3.2.10 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-core_2.10:3.2.10 requires scala version: 2.10.0
[WARNING] Multiple versions of scala libraries detected!
[INFO] D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-apis\src\test\java:-1: info: compiling
[INFO] D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-apis\src\test\scala:-1: info: compiling
[INFO] Compiling 3 source files to D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-apis\target\scala-2.10.4\test-classes at 1463049635774
[INFO] prepare-compile in 0 s
[INFO] compile in 6 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ adam-apis_2.10 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 2 source files to D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-apis\target\scala-2.10.4\test-classes
[INFO] 
[INFO] --- maven-surefire-plugin:2.18.1:test (default-test) @ adam-apis_2.10 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:1.0:test (test) @ adam-apis_2.10 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:2.6:jar (default-jar) @ adam-apis_2.10 ---
[INFO] Building jar: D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-apis\target\adam-apis_2.10-0.19.0.jar
[INFO] 
[INFO] --- maven-jar-plugin:2.6:test-jar (default) @ adam-apis_2.10 ---
[INFO] Building jar: D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-apis\target\adam-apis_2.10-0.19.0-tests.jar
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.10: CLI 0.19.0
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.6.1:clean (default-clean) @ adam-cli_2.10 ---
[INFO] Deleting D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-cli\target
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli_2.10 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli_2.10 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.0:revision (default) @ adam-cli_2.10 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0-alpha-3:filter-sources (filter-src) @ adam-cli_2.10 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] Source directory: D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-cli\target\generated-sources\java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:1.9.1:add-source (add-source) @ adam-cli_2.10 ---
[INFO] Source directory: D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-cli\src\main\scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli_2.10 ---
[INFO] Modified 0 of 36 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:2.7:resources (default-resources) @ adam-cli_2.10 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli_2.10 ---
[WARNING]  Expected all dependencies to require Scala version: 2.10.4
[WARNING]  com.twitter:chill_2.10:0.5.0 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-remote_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-actor_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-slf4j_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  org.apache.spark:spark-core_2.10:1.5.2 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-jackson_2.10:3.2.10 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-core_2.10:3.2.10 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-ast_2.10:3.2.10 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-core_2.10:3.2.10 requires scala version: 2.10.0
[WARNING] Multiple versions of scala libraries detected!
[INFO] D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-cli\target\generated-sources\java-templates:-1: info: compiling
[INFO] D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-cli\src\main\scala:-1: info: compiling
[INFO] Compiling 26 source files to D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-cli\target\scala-2.10.4\classes at 1463049655775
[INFO] prepare-compile in 0 s
[INFO] compile in 22 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ adam-cli_2.10 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-cli\target\scala-2.10.4\classes
[INFO] 
[INFO] --- build-helper-maven-plugin:1.9.1:add-test-source (add-test-source) @ adam-cli_2.10 ---
[INFO] Test Source directory: D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-cli\src\test\scala added.
[INFO] 
[INFO] --- maven-resources-plugin:2.7:testResources (default-testResources) @ adam-cli_2.10 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 9 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli_2.10 ---
[WARNING]  Expected all dependencies to require Scala version: 2.10.4
[WARNING]  com.twitter:chill_2.10:0.5.0 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-remote_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-actor_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-slf4j_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  org.apache.spark:spark-core_2.10:1.5.2 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-jackson_2.10:3.2.10 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-core_2.10:3.2.10 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-ast_2.10:3.2.10 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-core_2.10:3.2.10 requires scala version: 2.10.0
[WARNING] Multiple versions of scala libraries detected!
[INFO] D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-cli\src\test\scala:-1: info: compiling
[INFO] Compiling 11 source files to D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-cli\target\scala-2.10.4\test-classes at 1463049679152
[INFO] prepare-compile in 0 s
[INFO] compile in 21 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ adam-cli_2.10 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:2.18.1:test (default-test) @ adam-cli_2.10 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:1.0:test (test) @ adam-cli_2.10 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:2.6:jar (default-jar) @ adam-cli_2.10 ---
[INFO] Building jar: D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-cli\target\adam-cli_2.10-0.19.0.jar
[INFO] 
[INFO] --- maven-shade-plugin:2.4.1:shade (default) @ adam-cli_2.10 ---
[INFO] Including commons-cli:commons-cli:jar:1.2 in the shaded jar.
[INFO] Including commons-httpclient:commons-httpclient:jar:3.1 in the shaded jar.
[INFO] Including commons-codec:commons-codec:jar:1.4 in the shaded jar.
[INFO] Including commons-logging:commons-logging:jar:1.1.3 in the shaded jar.
[INFO] Including org.apache.commons:commons-compress:jar:1.4.1 in the shaded jar.
[INFO] Including org.codehaus.jackson:jackson-core-asl:jar:1.9.13 in the shaded jar.
[INFO] Including org.codehaus.jackson:jackson-mapper-asl:jar:1.9.13 in the shaded jar.
[INFO] Including com.google.code.findbugs:jsr305:jar:1.3.9 in the shaded jar.
[INFO] Including org.slf4j:slf4j-api:jar:1.7.10 in the shaded jar.
[INFO] Including log4j:log4j:jar:1.2.17 in the shaded jar.
[INFO] Including org.xerial.snappy:snappy-java:jar:1.1.1.7 in the shaded jar.
[INFO] Including com.thoughtworks.paranamer:paranamer:jar:2.6 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-io_2.10:jar:0.2.4 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-misc_2.10:jar:0.2.4 in the shaded jar.
[INFO] Including org.apache.httpcomponents:httpclient:jar:4.5.1 in the shaded jar.
[INFO] Including org.apache.httpcomponents:httpcore:jar:4.4.3 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-cli_2.10:jar:0.2.4 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-avro:jar:1.8.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-column:jar:1.8.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-common:jar:1.8.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-encoding:jar:1.8.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-hadoop:jar:1.8.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-jackson:jar:1.8.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-format:jar:2.3.0-incubating in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-metrics_2.10:jar:0.2.4 in the shaded jar.
[INFO] Including com.netflix.servo:servo-core:jar:0.10.0 in the shaded jar.
[INFO] Including com.google.code.findbugs:annotations:jar:2.0.0 in the shaded jar.
[INFO] Including com.netflix.servo:servo-internal:jar:0.10.0 in the shaded jar.
[INFO] Including org.scoverage:scalac-scoverage-plugin_2.10:jar:1.1.1 in the shaded jar.
[INFO] Including org.bdgenomics.bdg-formats:bdg-formats:jar:0.7.0 in the shaded jar.
[INFO] Including org.apache.avro:avro:jar:1.7.7 in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-core_2.10:jar:0.19.0 in the shaded jar.
[INFO] Including com.esotericsoftware.kryo:kryo:jar:2.24.0 in the shaded jar.
[INFO] Including com.esotericsoftware.minlog:minlog:jar:1.2 in the shaded jar.
[INFO] Including org.objenesis:objenesis:jar:2.1 in the shaded jar.
[INFO] Including commons-io:commons-io:jar:1.3.2 in the shaded jar.
[INFO] Including it.unimi.dsi:fastutil:jar:6.6.5 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-scala_2.10:jar:1.8.1 in the shaded jar.
[INFO] Including org.seqdoop:hadoop-bam:jar:7.1.0 in the shaded jar.
[INFO] Including com.github.samtools:htsjdk:jar:1.139 in the shaded jar.
[INFO] Including org.apache.commons:commons-jexl:jar:2.1.1 in the shaded jar.
[INFO] Including org.tukaani:xz:jar:1.5 in the shaded jar.
[INFO] Including org.apache.ant:ant:jar:1.8.2 in the shaded jar.
[INFO] Including org.apache.ant:ant-launcher:jar:1.8.2 in the shaded jar.
[INFO] Including com.google.guava:guava:jar:16.0.1 in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-apis_2.10:jar:0.19.0 in the shaded jar.
[INFO] Including org.scala-lang:scala-library:jar:2.10.4 in the shaded jar.
[INFO] Including org.slf4j:slf4j-log4j12:jar:1.7.12 in the shaded jar.
[INFO] Including args4j:args4j:jar:2.0.31 in the shaded jar.
[INFO] Including net.codingwell:scala-guice_2.10:jar:4.0.0 in the shaded jar.
[INFO] Including com.google.inject:guice:jar:4.0 in the shaded jar.
[INFO] Including javax.inject:javax.inject:jar:1 in the shaded jar.
[INFO] Including aopalliance:aopalliance:jar:1.0 in the shaded jar.
[INFO] Including com.google.inject.extensions:guice-multibindings:jar:4.0 in the shaded jar.
[WARNING] annotations-2.0.0.jar, jsr305-1.3.9.jar define 34 overlapping classes: 
[WARNING]   - javax.annotation.Nonnegative
[WARNING]   - javax.annotation.CheckForSigned
[WARNING]   - javax.annotation.CheckForNull
[WARNING]   - javax.annotation.Tainted
[WARNING]   - javax.annotation.meta.TypeQualifierValidator
[WARNING]   - javax.annotation.meta.TypeQualifier
[WARNING]   - javax.annotation.Syntax
[WARNING]   - javax.annotation.Detainted
[WARNING]   - javax.annotation.Nonnull$Checker
[WARNING]   - javax.annotation.meta.TypeQualifierNickname
[WARNING]   - 24 more...
[WARNING] maven-shade-plugin has detected that some class files are
[WARNING] present in two or more JARs. When this happens, only one
[WARNING] single version of the class is copied to the uber jar.
[WARNING] Usually this is not harmful and you can skip these warnings,
[WARNING] otherwise try to manually exclude artifacts based on
[WARNING] mvn dependency:tree -Ddetail=true and the above output.
[WARNING] See http://docs.codehaus.org/display/MAVENUSER/Shade+Plugin
[INFO] Replacing original artifact with shaded artifact.
[INFO] Replacing D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-cli\target\adam-cli_2.10-0.19.0.jar with D:\all\eclipse432\adam-2.10-0.19-git-bin\adam-2.10-0.19-git\adam-cli\target\adam-cli_2.10-0.19.0-shaded.jar
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] ADAM_2.10 .......................................... SUCCESS [ 21.420 s]
[INFO] ADAM_2.10: Core .................................... SUCCESS [03:12 min]
[INFO] ADAM_2.10: APIs for Java ........................... SUCCESS [ 14.989 s]
[INFO] ADAM_2.10: CLI ..................................... SUCCESS [01:14 min]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 05:04 min
[INFO] Finished at: 2016-05-12T18:41:58+08:00
[INFO] Final Memory: 64M/413M
[INFO] ------------------------------------------------------------------------

参考1：

【1】 http://blog.csdn.net/xubo245/article/details/51385683