relion无法提交任务的解决方法

1. mpiexec: error while loading shared libraries: libtorque.so.2: cannot open shared object file: No such file or directory
解决方法：
（bash）在～/.bashrc下将 LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH添加进去
export PATH=/public/CBIshare/Software/workshop_soft/relion-1.2/bin:$PATH
export LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH
export PATH=/public/CBIshare/Software/workshop_soft/relion-1.2:$PATH
export RELION_QSUB_TEMPLATE="/public/CBIshare/Software/workshop_soft/relion-1.2/qsub.csh"
export RELION_CTFFIND3_EXECUTABLE="/public/CBIshare/Software/workshop_soft/ctffind3.exe"
export PATH=/usr/local/bin:$PATH
或
（csh）
setenv LD_LIBRARY_PATH /usr/local/lib:$LD_LIBRARY_PATH

2.[node2:24085] [[64770,1],0] ORTE_ERROR_LOG: Data unpack would read past end of buffer in file util/nidmap.c at line 118
[node2:24085] [[64770,1],0] ORTE_ERROR_LOG: Data unpack would read past end of buffer in file ess_env_module.c at line 174
--------------------------------------------------------------------------
It looks like orte_init failed for some reason; your parallel process is
likely to abort.  There are many reasons that a parallel process can
fail during orte_init; some of which are due to configuration or
environment problems.  This failure appears to be an internal failure;
here's some additional information (which may only be relevant to an
Open MPI developer):

  orte_util_nidmap_init failed
解决方法：mpi在bash下正常，但再csh下不正常，貌似解决方法是将一些路径添加到～/.cshrc中，记不清了

3. /var/spool/torque/mom_priv/jobs/271.emcluster.cbi.ibp.ac.cn.SC: line 12: /usr/local/bin/mpiexec: No such file or directory
解决方法：
（1）在各个节点上安装openmpi。
（2）在公共节点上安装openmpi，然后写到各节点的目录中。

4。  === MPI setup ===
 + Number of MPI processes            = 8
 + Master  (0) runs on host            = node2
 + Slave     1 runs on host            = node2
 + Slave     2 runs on host            = node2
 + Slave     3 runs on host            = node2
 + Slave     4 runs on host            = node2
 + Slave     5 runs on host            = node2
 + Slave     6 runs on host            = node2
 + Slave     7 runs on host            = node2
 =================
 Using CTFFINDs executable in: /public/CBIshare/Software/workshop_soft/ctffind3.exe
 to estimate CTF parameters for the following micrographs:
 Extract particles based on the following (boxer) coordinate files:
 Estimating CTF parameters using CTFFIND3 ...
 Extracting particles from the micrographs ...
 Joining all metadata in one STAR file...
 Written out STAR file with all particles in particles.star
 Done!
解决方法：
没有报错，但啥都没有。原来再relion里头要填写绝对路径：
input micrographs: /sugon/CBI/DingWei/set_002_challenge_2/Micrographs/*.mrc
Particle coordinate files: /sugon/CBI/DingWei/set_002_challenge_2/Micrographs/*.box