ubuntu16.04的peridigm安装脚本

#!/bin/bash

#build-tools
sudo apt-get install gcc g++ gfortran python -y
#sudo apt-get install gcc g++ gfortran python ctags vim -y
#sudo apt-get install mpich -y
sudo apt-get install git wget -y

# peridigm依赖包
sudo apt-get update
sudo apt-get install zlib1g-dbg zlib1g-dev -y
sudo apt-get install libcurlpp-dev libflickcurl-dev -y
sudo apt-get install libblas-dev -y
sudo apt-get install liblapack-dev -y
sudo apt-get install mpich -y
sudo apt-get install libx11-dev -y
sudo apt-get install libxext-dev -y 
sudo apt-get install libxtst-dev libxrender-dev libxmu-dev libxmuu-dev -y

#Install yaml-cpp-dev
sudo apt-get install libyaml-cpp-dev -y
#########################################################################

#Bulding OpenMPI 3.0.0
home=$HOME
openmpi_path="openmpi-3.0.0"
cd
cd package 
#wget https://download.open-mpi.org/release/open-mpi/v3.0/openmpi-3.0.0.tar.gz
tar -xvf openmpi-3.0.0.tar.gz
cd $openmpi_path
mkdir -p build 
cd build 
pwd
echo "config_openmpi**********************************"
../configure --prefix=$home/local/openmpi 
make -j8
make install
#########################################################################

#导入环境变量
#环境变量的生存周期为：直到关闭终端,并不永久生效
export CC=$home/local/openmpi/bin/mpicc 
export CXX=$home/local/openmpi/bin/mpicxx 
export CF=$home/local/openmpi/bin/mpif90 
export FC=$home/local/openmpi/bin/mpif90 
export F77=$home/local/openmpi/bin/mpif77
export LIBRARY_PATH=$home/local/openmpi/lib/:${
     LIBRARY_PATH}
export PATH=$home/local/openmpi/bin/:$PATH


#Bullding Boost 1.58.0
echo "Boost Start>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>"
cd 
cd package 
#wget https://dl.bintray.com/boostorg/release/1.58.0/source/boost_1_58_0.tar.gz
tar -xvf boost_1_58_0.tar.gz
cd boost_1_58_0 
echo "using mpi ;" >> user-config.jam
./bootstrap.sh --prefix=$home/local/boost
./b2 --layout=tagged -j 
./b2 install
#########################################################################

#Building HDF5 (hdf5-1.8.16-patch1)
cd 
cd package 
#wget https://launchpadlibrarian.net/251920078/hdf5_1.8.16+docs.orig.tar.gz
tar -xvf hdf5-1.8.16.tar.gz
cd hdf5-1.8.16 
mkdir build -p
cd build 
../configure --prefix=$home/local/hdf5 --enable-parallel 
make -j8 
#make test
make install
#########################################################################

#Building NETCDF (netcdf-4.3.3.1)
sudo apt-get install m4 -y
cd 
cd package 
#wget https://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-cxx4-4.3.1.tar.gz
tar -xvf netcdf-4.3.3.1.tar.gz
cd netcdf-4.3.3.1 
H5DIR="$home/local/hdf5-1.8.15"
export CPPFLAGS=-I${
     H5DIR}/include/ 
export LDFLAGS=-L${
     H5DIR}/lib/
# Configure NetCDF 
mkdir build -p 
cd build 
pwd
../configure --prefix=$home/local/netcdf  --disable-netcdf-4 --disable-dap --enable-parallel 
make -j8
make install

#########################################################################


#Building Trilions (trilinos-12.12.1)

#新装系统shell的系统资源限制为1024,编译过程中会出现文件过多的提示
ulimit -n 65535
trilinos_path=Trilinos-trilinos-release-12-6-4
cd 
cd package 
#wget https://github.com/trilinos/Trilinos/archive/trilinos-release-12-6-4.tar.gz
tar -xvf trilinos-12.12.1-Source.tar.gz
cd  trilinos-12.12.1-Source
mkdir build -p 
cd build 
rm -rf CMakeCache.txt CMakeFiles 
#配置Trilions
cmake \
-D CMAKE_INSTALL_PREFIX:PATH=$home/local/trilinos \
-D MPI_BASE_DIR:PATH="$home/local/openmpi/" \
-D CMAKE_CXX_FLAGS:STRING="-O2 -std=c++11 -pedantic -ftrapv -Wall -Wno-long-long" \
-D CMAKE_BUILD_TYPE:STRING=RELEASE \
-D Trilinos_WARNINGS_AS_ERRORS_FLAGS:STRING="" \
-D Trilinos_ENABLE_ALL_PACKAGES:BOOL=OFF \
-D BUILD_SHARED_LIBS:BOOL=ON \
-D Trilinos_ENABLE_Fortran:BOOL=ON \
-D Trilinos_ENABLE_Teuchos:BOOL=ON \
-D Trilinos_ENABLE_Shards:BOOL=ON \
-D Trilinos_ENABLE_Sacado:BOOL=ON \
-D Trilinos_ENABLE_Epetra:BOOL=ON \
-D Trilinos_ENABLE_EpetraExt:BOOL=ON \
-D Trilinos_ENABLE_Ifpack:BOOL=ON \
-D Trilinos_ENABLE_AztecOO:BOOL=ON \
-D Trilinos_ENABLE_Amesos:BOOL=ON \
-D Trilinos_ENABLE_Anasazi:BOOL=ON \
-D Trilinos_ENABLE_Belos:BOOL=ON \
-D Trilinos_ENABLE_ML:BOOL=ON \
-D Trilinos_ENABLE_Phalanx:BOOL=ON \
-D Trilinos_ENABLE_Intrepid:BOOL=ON \
-D Trilinos_ENABLE_NOX:BOOL=ON \
-D Trilinos_ENABLE_Stratimikos:BOOL=ON \
-D Trilinos_ENABLE_Thyra:BOOL=ON \
-D Trilinos_ENABLE_Rythmos:BOOL=ON \
-D Trilinos_ENABLE_MOOCHO:BOOL=ON \
-D Trilinos_ENABLE_TriKota:BOOL=OFF \
-D Trilinos_ENABLE_Stokhos:BOOL=ON \
-D Trilinos_ENABLE_Zoltan:BOOL=ON \
-D Trilinos_ENABLE_Piro:BOOL=ON \
-D Trilinos_ENABLE_Teko:BOOL=ON \
-D Trilinos_ENABLE_SEACASIoss:BOOL=ON \
-D Trilinos_ENABLE_SEACAS:BOOL=ON \
-D Trilinos_ENABLE_SEACASBlot:BOOL=ON \
-D Trilinos_ENABLE_Pamgen:BOOL=ON \
-D Trilinos_ENABLE_EXAMPLES:BOOL=OFF \
-D Trilinos_ENABLE_TESTS:BOOL=ON \
-D TPL_ENABLE_Matio=OFF \
-D TPL_ENABLE_HDF5:BOOL=ON \
-D HDF5_INCLUDE_DIRS:PATH=$home/local/hdf5/include/ \
-D HDF5_LIBRARY_DIRS:PATH=$home/local/hdf5/lib/ \
-D TPL_ENABLE_Netcdf:BOOL=ON \
-D Netcdf_INCLUDE_DIRS:PATH=$home/local/netcdf/include/ \
-D Netcdf_LIBRARY_DIRS:PATH=$home/local/netcdf/lib/ \
-D TPL_ENABLE_MPI:BOOL=ON \
-D TPL_ENABLE_BLAS:BOOL=ON \
-D TPL_BLAS_LIBRATIES:FILEPATH=/usr/lib/libblas.so \
-D TPL_ENABLE_LAPACK:BOOL=ON \
-D TPL_LAPACK_LIBRATIES:FILEPATH=/usr/lib/liblapack.so \
-D TPL_ENABLE_Boost:BOOL=ON \
-D Boost_INCLUDE_DIRS:PATH=$home/local/boost/include/ \
-D Boost_LIBRARY_DIRS:PATH=$home/local/boost/lib/ \
-D CMAKE_VERBOSE_MAKEFILE:BOOL=OFF \
-D Trilinos_VERBOSE_CONFIGURE:BOOL=OFF \
-D TPL_ENABLE_Zlib:BOOL=ON \
-D TPL_ENABLE_yaml-cpp:BOOL=ON \
$home/package/trilinos-12.12.1-Source/

make -j8
make install 
#########################################################################


#Building Peridigm (1.4.1)
ulimit -n 65535
cd 
cd package 
pwd
#git clone https://github.com/peridigm/peridigm.git
unzip peridigm-master
peridigm_name=peridigm-master
cd $peridigm_name  
mkdir -p build   
cd build 
pwd

#配置 安装Peridim

#配置安装路径为$home/local
#-D CMAKE_INSTALL_PREFIX:PATH=$home/local/peridigm \
cmake \
-D CMAKE_BUILD_TYPE:STRING=Release \
-D Boost_NO_SYSTEM_PATHS=ON \
-D Trilinos_DIR:PATH=$home/local/trilinos/lib/cmake/Trilinos/ \
-D CMAKE_CXX_COMPILER=$home/local/openmpi/bin/mpicxx \
-D CMAKE_C_COMPILER=$home/local/openmpi/bin/mpicc \
-D BOOST_ROOT=$home/local/boost/ \
-D CMAKE_CXX_FLAGS:STRING="-O2 -Wall -ansi -pedantic -Wno-long-long -ftrapv -Wno-deprecated -std=gnu++11 " \
$home/package/$peridigm_name/
make -j8
sudo make install

#更改环境变量
cd 
#备份.bashrc
cp .bashrc .bashrc_backup
#在.bashrc末尾追加环境变量
echo "
export LD_LIBRARY_PATH=$home/local/openmpi/lib/:$home/local/openmpi/lib/:$LD_LIBRARY_PATH
export LIBRARY_PATH=$home/local/openmpi/lib/:$home/local/openmpi/lib/:$LIBRARY_PATH 
" >> .bashrc
source .bashrc

#添加全局环境变量  --当把peridigm的安装路径设置为$home/local时，把下面的注释去掉
#sudo echo "
#export PATH=$PATH:$home/local/bin
#" >> /etc/bash.bashrc

#2020年 01月 24日 星期五 15:37:48 CST

为了方便需要的朋友，已经将peridigm需要的依赖包、分段脚本、遇到的问题打包成压缩包，下载地址：添加链接描述